NEWS

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denovolyzeR 0.2.0 (2016-08-01)

• Fixed a critical bug, whereby denovolyzeByGenes() returned incorrect output if user overrode default variant classes analysed (using includeClasses argument; column labels did not match data content)
• Updated underlying dependency from reshape to reshape2
• Changed output format so that all data is returned in columns. Previously either "gene" or "class" was returned as rownames of the output data structure.

denovolyzeR 0.1.1 (2016-06-18)

• Correct minor errors in vignette
• Provide citation
• Address compatibility with updated dplyr 0.5.0

denovolyzeR 0.1.0 (2015-04-09)

• This is the first release of denovolyzeR to CRAN

pre-release builds (0.0.0.9xxx)

• 2015-04-01: v0.0.0.9003
  new functionality includes analysis of sub-types of missense variation
  argument names and output formats are about to change: this development release serves to preserce a working version of the package using first draft argument names

• 2014-11-11: v0.0.0.9000 core statistical functionality is complete and ready for beta-testing
  main limitation is a lack of error-catching
  there may also be very minor modifications to underlying probability tables