Changes in version 0.2.0 (2016-08-01)                  

  - Fixed a critical bug, whereby denovolyzeByGenes() returned incorrect
    output if user overrode default variant classes analysed (using
    includeClasses argument; column labels did not match data content)
  - Updated underlying dependency from reshape to reshape2
  - Changed output format so that all data is returned in columns.
    Previously either "gene" or "class" was returned as rownames of the
    output data structure.

                 Changes in version 0.1.1 (2016-06-18)                  

  - Correct minor errors in vignette
  - Provide citation
  - Address compatibility with updated dplyr 0.5.0

                 Changes in version 0.1.0 (2015-04-09)                  

  - This is the first release of denovolyzeR to CRAN

pre-release builds (0.0.0.9xxx)

  - 2015-04-01: v0.0.0.9003
    new functionality includes analysis of sub-types of missense
    variation
    argument names and output formats are about to change: this
    development release serves to preserce a working version of the
    package using first draft argument names

  - 2014-11-11: v0.0.0.9000 core statistical functionality is complete
    and ready for beta-testing
    main limitation is a lack of error-catching
    there may also be very minor modifications to underlying probability
    tables